Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Smarca1Q6PGB8 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Smarca1Q6PGB8 Gm5522-201ENSMUST00000189483 1242 ntBASIC23.78■■□□□ 1.4
Smarca1Q6PGB8 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Smarca1Q6PGB8 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Smarca1Q6PGB8 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.78■■□□□ 1.4
Smarca1Q6PGB8 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smarca1Q6PGB8 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smarca1Q6PGB8 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.76■■□□□ 1.39
Smarca1Q6PGB8 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smarca1Q6PGB8 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Smarca1Q6PGB8 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC23.75■■□□□ 1.39
Smarca1Q6PGB8 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.75■■□□□ 1.39
Smarca1Q6PGB8 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Smarca1Q6PGB8 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Smarca1Q6PGB8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smarca1Q6PGB8 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC23.73■■□□□ 1.39
Smarca1Q6PGB8 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Smarca1Q6PGB8 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Smarca1Q6PGB8 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Smarca1Q6PGB8 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Smarca1Q6PGB8 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC23.72■■□□□ 1.39
Smarca1Q6PGB8 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smarca1Q6PGB8 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Smarca1Q6PGB8 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC23.69■■□□□ 1.38
Smarca1Q6PGB8 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Smarca1Q6PGB8 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Smarca1Q6PGB8 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Gm37415-201ENSMUST00000192265 2054 ntBASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC23.68■■□□□ 1.38
Smarca1Q6PGB8 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smarca1Q6PGB8 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smarca1Q6PGB8 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC23.67■■□□□ 1.38
Smarca1Q6PGB8 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smarca1Q6PGB8 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC23.67■■□□□ 1.38
Smarca1Q6PGB8 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smarca1Q6PGB8 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Smarca1Q6PGB8 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Smarca1Q6PGB8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Smarca1Q6PGB8 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC23.64■■□□□ 1.38
Smarca1Q6PGB8 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
Smarca1Q6PGB8 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
Smarca1Q6PGB8 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Smarca1Q6PGB8 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Smarca1Q6PGB8 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Smarca1Q6PGB8 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms