Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.24■□□□□ 0.83
Nr1h4Q60641 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h4Q60641 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.22■□□□□ 0.83
Nr1h4Q60641 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h4Q60641 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h4Q60641 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
Nr1h4Q60641 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h4Q60641 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h4Q60641 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h4Q60641 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.21■□□□□ 0.83
Nr1h4Q60641 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.21■□□□□ 0.83
Nr1h4Q60641 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h4Q60641 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.2■□□□□ 0.82
Nr1h4Q60641 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h4Q60641 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h4Q60641 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.19■□□□□ 0.82
Nr1h4Q60641 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h4Q60641 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h4Q60641 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h4Q60641 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nr1h4Q60641 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.15■□□□□ 0.82
Nr1h4Q60641 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Nr1h4Q60641 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.15■□□□□ 0.82
Nr1h4Q60641 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nr1h4Q60641 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nr1h4Q60641 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Nr1h4Q60641 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Nr1h4Q60641 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Nr1h4Q60641 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Nr1h4Q60641 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Nr1h4Q60641 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Nr1h4Q60641 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nr1h4Q60641 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nr1h4Q60641 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Nr1h4Q60641 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.12■□□□□ 0.81
Nr1h4Q60641 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nr1h4Q60641 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nr1h4Q60641 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Nr1h4Q60641 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nr1h4Q60641 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nr1h4Q60641 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Nr1h4Q60641 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms