Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Limch1Q3UH68 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Limch1Q3UH68 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.07■■□□□ 1.6
Limch1Q3UH68 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.06■■□□□ 1.6
Limch1Q3UH68 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Limch1Q3UH68 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Limch1Q3UH68 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Limch1Q3UH68 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Limch1Q3UH68 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
Limch1Q3UH68 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC25.05■■□□□ 1.6
Limch1Q3UH68 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Limch1Q3UH68 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
Limch1Q3UH68 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Rps24-207ENSMUST00000224568 714 ntBASIC25.03■■□□□ 1.6
Limch1Q3UH68 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Limch1Q3UH68 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
Limch1Q3UH68 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
Limch1Q3UH68 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Limch1Q3UH68 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Limch1Q3UH68 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Limch1Q3UH68 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
Limch1Q3UH68 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Limch1Q3UH68 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC25■■□□□ 1.59
Limch1Q3UH68 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Limch1Q3UH68 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25■■□□□ 1.59
Limch1Q3UH68 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.99■■□□□ 1.59
Limch1Q3UH68 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Limch1Q3UH68 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC24.97■■□□□ 1.59
Limch1Q3UH68 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Limch1Q3UH68 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC24.97■■□□□ 1.59
Limch1Q3UH68 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Limch1Q3UH68 Gm13042-201ENSMUST00000119244 1955 ntBASIC24.96■■□□□ 1.59
Limch1Q3UH68 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Limch1Q3UH68 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Limch1Q3UH68 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Limch1Q3UH68 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Limch1Q3UH68 Gm45102-201ENSMUST00000207427 857 ntBASIC24.95■■□□□ 1.58
Limch1Q3UH68 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Limch1Q3UH68 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Limch1Q3UH68 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Limch1Q3UH68 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Limch1Q3UH68 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Limch1Q3UH68 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC24.94■■□□□ 1.58
Limch1Q3UH68 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC24.94■■□□□ 1.58
Limch1Q3UH68 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC24.94■■□□□ 1.58
Limch1Q3UH68 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Limch1Q3UH68 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Limch1Q3UH68 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Limch1Q3UH68 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Limch1Q3UH68 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
Limch1Q3UH68 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms