Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col28a1Q2UY11 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Col28a1Q2UY11 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col28a1Q2UY11 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col28a1Q2UY11 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Gm7332-201ENSMUST00000118351 454 ntBASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col28a1Q2UY11 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col28a1Q2UY11 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col28a1Q2UY11 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col28a1Q2UY11 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col28a1Q2UY11 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col28a1Q2UY11 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.55■□□□□ 0.88
Col28a1Q2UY11 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Col28a1Q2UY11 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col28a1Q2UY11 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col28a1Q2UY11 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col28a1Q2UY11 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col28a1Q2UY11 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col28a1Q2UY11 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col28a1Q2UY11 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Col28a1Q2UY11 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.53■□□□□ 0.88
Col28a1Q2UY11 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col28a1Q2UY11 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col28a1Q2UY11 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col28a1Q2UY11 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col28a1Q2UY11 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Col28a1Q2UY11 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col28a1Q2UY11 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col28a1Q2UY11 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col28a1Q2UY11 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.5■□□□□ 0.87
Col28a1Q2UY11 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col28a1Q2UY11 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col28a1Q2UY11 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col28a1Q2UY11 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col28a1Q2UY11 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col28a1Q2UY11 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Col28a1Q2UY11 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col28a1Q2UY11 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col28a1Q2UY11 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Col28a1Q2UY11 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Terc-201ENSMUST00000082862 423 ntBASIC20.46■□□□□ 0.87
Col28a1Q2UY11 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col28a1Q2UY11 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms