Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm8493-201ENSMUST00000196881 489 ntBASIC22.23■■□□□ 1.15
Sox1P53783 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Sox1P53783 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Sox1P53783 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC22.22■■□□□ 1.15
Sox1P53783 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.22■■□□□ 1.15
Sox1P53783 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
Sox1P53783 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 Gm10849-201ENSMUST00000100397 618 ntBASIC22.21■■□□□ 1.15
Sox1P53783 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
Sox1P53783 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox1P53783 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Sox1P53783 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Sox1P53783 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Sox1P53783 Gm12669-201ENSMUST00000122162 1009 ntBASIC22.2■■□□□ 1.14
Sox1P53783 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Sox1P53783 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Sox1P53783 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Sox1P53783 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox1P53783 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox1P53783 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox1P53783 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC22.19■■□□□ 1.14
Sox1P53783 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC22.19■■□□□ 1.14
Sox1P53783 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox1P53783 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Sox1P53783 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Sox1P53783 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.18■■□□□ 1.14
Sox1P53783 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Sox1P53783 Spcs1-204ENSMUST00000226782 949 ntBASIC22.17■■□□□ 1.14
Sox1P53783 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Sox1P53783 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Sox1P53783 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Sox1P53783 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Sox1P53783 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Sox1P53783 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC22.16■■□□□ 1.14
Sox1P53783 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC22.16■■□□□ 1.14
Sox1P53783 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Sox1P53783 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Sox1P53783 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Sox1P53783 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Sox1P53783 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Sox1P53783 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC22.15■■□□□ 1.14
Sox1P53783 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC22.15■■□□□ 1.14
Sox1P53783 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC22.15■■□□□ 1.14
Sox1P53783 Nsd1-206ENSMUST00000224918 1001 ntBASIC22.15■■□□□ 1.14
Sox1P53783 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Sox1P53783 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Sox1P53783 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Sox1P53783 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Sox1P53783 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Sox1P53783 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Sox1P53783 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Sox1P53783 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Sox1P53783 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Sox1P53783 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Sox1P53783 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Sox1P53783 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Sox1P53783 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox1P53783 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.12■■□□□ 1.13
Sox1P53783 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox1P53783 Gm42642-201ENSMUST00000200683 355 ntBASIC22.12■■□□□ 1.13
Sox1P53783 Gm10493-201ENSMUST00000097270 612 ntBASIC22.12■■□□□ 1.13
Sox1P53783 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox1P53783 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox1P53783 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
Sox1P53783 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.12■■□□□ 1.13
Sox1P53783 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox1P53783 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox1P53783 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox1P53783 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox1P53783 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
Sox1P53783 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.1■■□□□ 1.13
Sox1P53783 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Sox1P53783 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Sox1P53783 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Sox1P53783 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Sox1P53783 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC22.09■■□□□ 1.13
Sox1P53783 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC22.09■■□□□ 1.13
Sox1P53783 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Sox1P53783 Wdr70-203ENSMUST00000227371 1130 ntBASIC22.09■■□□□ 1.13
Sox1P53783 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Sox1P53783 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC22.09■■□□□ 1.13
Sox1P53783 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Sox1P53783 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Sox1P53783 Gm43173-201ENSMUST00000202246 593 ntBASIC22.08■■□□□ 1.13
Sox1P53783 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Sox1P53783 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Sox1P53783 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Sox1P53783 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Sox1P53783 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Sox1P53783 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Sox1P53783 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms