Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm8093-201ENSMUST00000128935 1892 ntBASIC22.66■■□□□ 1.22
Shmt1P50431 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Gm11847-201ENSMUST00000125165 1119 ntBASIC22.65■■□□□ 1.22
Shmt1P50431 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC22.65■■□□□ 1.22
Shmt1P50431 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
Shmt1P50431 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC22.65■■□□□ 1.22
Shmt1P50431 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Shmt1P50431 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Shmt1P50431 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC22.64■■□□□ 1.21
Shmt1P50431 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Shmt1P50431 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Shmt1P50431 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC22.64■■□□□ 1.21
Shmt1P50431 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
Shmt1P50431 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Shmt1P50431 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC22.63■■□□□ 1.21
Shmt1P50431 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Rps24-207ENSMUST00000224568 714 ntBASIC22.63■■□□□ 1.21
Shmt1P50431 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Shmt1P50431 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
Shmt1P50431 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Shmt1P50431 Gm42501-201ENSMUST00000200220 1026 ntBASIC22.62■■□□□ 1.21
Shmt1P50431 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
Shmt1P50431 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Shmt1P50431 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Shmt1P50431 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Shmt1P50431 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
Shmt1P50431 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Shmt1P50431 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Shmt1P50431 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Shmt1P50431 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC22.6■■□□□ 1.21
Shmt1P50431 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Shmt1P50431 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Shmt1P50431 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Shmt1P50431 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC22.59■■□□□ 1.21
Shmt1P50431 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.59■■□□□ 1.21
Shmt1P50431 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Shmt1P50431 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Shmt1P50431 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Shmt1P50431 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Shmt1P50431 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Shmt1P50431 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Shmt1P50431 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Shmt1P50431 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Shmt1P50431 AC158990.1-201ENSMUST00000221450 2016 ntBASIC22.57■■□□□ 1.2
Shmt1P50431 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Shmt1P50431 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Shmt1P50431 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
Shmt1P50431 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
Shmt1P50431 Gm45102-201ENSMUST00000207427 857 ntBASIC22.56■■□□□ 1.2
Shmt1P50431 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Shmt1P50431 Gm9959-201ENSMUST00000068277 390 ntBASIC22.56■■□□□ 1.2
Shmt1P50431 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Shmt1P50431 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Shmt1P50431 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Shmt1P50431 Gm14117-201ENSMUST00000122417 843 ntBASIC22.55■■□□□ 1.2
Shmt1P50431 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.55■■□□□ 1.2
Shmt1P50431 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC22.55■■□□□ 1.2
Shmt1P50431 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Shmt1P50431 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Shmt1P50431 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Shmt1P50431 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC22.54■■□□□ 1.2
Shmt1P50431 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC22.54■■□□□ 1.2
Shmt1P50431 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC22.54■■□□□ 1.2
Shmt1P50431 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC22.54■■□□□ 1.2
Shmt1P50431 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.54■■□□□ 1.2
Shmt1P50431 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
Shmt1P50431 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC22.54■■□□□ 1.2
Shmt1P50431 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shmt1P50431 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Shmt1P50431 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Shmt1P50431 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Shmt1P50431 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Shmt1P50431 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC22.53■■□□□ 1.2
Shmt1P50431 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC22.53■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms