Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.13■□□□□ 0.81
Msx1P13297 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Msx1P13297 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Msx1P13297 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Gm7417-201ENSMUST00000192950 473 ntBASIC20.12■□□□□ 0.81
Msx1P13297 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msx1P13297 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Msx1P13297 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msx1P13297 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msx1P13297 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msx1P13297 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msx1P13297 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msx1P13297 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msx1P13297 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msx1P13297 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msx1P13297 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Msx1P13297 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.09■□□□□ 0.81
Msx1P13297 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Msx1P13297 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msx1P13297 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msx1P13297 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.09■□□□□ 0.81
Msx1P13297 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Msx1P13297 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Msx1P13297 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msx1P13297 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msx1P13297 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.08■□□□□ 0.81
Msx1P13297 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Msx1P13297 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Msx1P13297 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msx1P13297 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Msx1P13297 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Msx1P13297 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.07■□□□□ 0.8
Msx1P13297 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msx1P13297 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msx1P13297 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msx1P13297 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.06■□□□□ 0.8
Msx1P13297 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Msx1P13297 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msx1P13297 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msx1P13297 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.05■□□□□ 0.8
Msx1P13297 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msx1P13297 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Msx1P13297 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msx1P13297 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Msx1P13297 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.05■□□□□ 0.8
Msx1P13297 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
Msx1P13297 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msx1P13297 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Msx1P13297 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.03■□□□□ 0.8
Msx1P13297 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.03■□□□□ 0.8
Msx1P13297 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msx1P13297 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Msx1P13297 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msx1P13297 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.02■□□□□ 0.8
Msx1P13297 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msx1P13297 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msx1P13297 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.02■□□□□ 0.8
Msx1P13297 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.02■□□□□ 0.79
Msx1P13297 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msx1P13297 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msx1P13297 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msx1P13297 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msx1P13297 Gm9847-201ENSMUST00000052528 599 ntBASIC20.01■□□□□ 0.79
Msx1P13297 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msx1P13297 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msx1P13297 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.01■□□□□ 0.79
Msx1P13297 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msx1P13297 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msx1P13297 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msx1P13297 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Msx1P13297 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Msx1P13297 Gm17641-201ENSMUST00000166328 2350 ntBASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms