Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Clk3O35492 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
Clk3O35492 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.13■□□□□ 0.81
Clk3O35492 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.13■□□□□ 0.81
Clk3O35492 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.13■□□□□ 0.81
Clk3O35492 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Clk3O35492 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Clk3O35492 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.12■□□□□ 0.81
Clk3O35492 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.12■□□□□ 0.81
Clk3O35492 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Clk3O35492 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.11■□□□□ 0.81
Clk3O35492 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.11■□□□□ 0.81
Clk3O35492 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Clk3O35492 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Clk3O35492 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Clk3O35492 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Clk3O35492 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Clk3O35492 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Clk3O35492 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Clk3O35492 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Clk3O35492 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.08■□□□□ 0.81
Clk3O35492 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Clk3O35492 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Clk3O35492 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Clk3O35492 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Clk3O35492 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Clk3O35492 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Clk3O35492 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Clk3O35492 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Clk3O35492 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Clk3O35492 Cap2-205ENSMUST00000225824 1634 ntBASIC20.07■□□□□ 0.8
Clk3O35492 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Clk3O35492 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Clk3O35492 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.06■□□□□ 0.8
Clk3O35492 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Clk3O35492 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Clk3O35492 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Clk3O35492 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Clk3O35492 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Clk3O35492 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.05■□□□□ 0.8
Clk3O35492 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clk3O35492 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.05■□□□□ 0.8
Clk3O35492 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.05■□□□□ 0.8
Clk3O35492 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clk3O35492 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clk3O35492 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clk3O35492 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clk3O35492 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.05■□□□□ 0.8
Clk3O35492 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clk3O35492 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clk3O35492 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Clk3O35492 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clk3O35492 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.03■□□□□ 0.8
Clk3O35492 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clk3O35492 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Clk3O35492 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Clk3O35492 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Clk3O35492 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clk3O35492 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clk3O35492 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clk3O35492 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clk3O35492 Gm22567-201ENSMUST00000175542 342 ntBASIC20.02■□□□□ 0.8
Clk3O35492 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clk3O35492 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.02■□□□□ 0.8
Clk3O35492 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Clk3O35492 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Clk3O35492 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Clk3O35492 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Clk3O35492 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Clk3O35492 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Clk3O35492 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Clk3O35492 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.01■□□□□ 0.79
Clk3O35492 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Clk3O35492 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms