Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.03■□□□□ 0.48
Col6a4A2AX52 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a4A2AX52 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.02■□□□□ 0.48
Col6a4A2AX52 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col6a4A2AX52 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.01■□□□□ 0.47
Col6a4A2AX52 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a4A2AX52 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC18■□□□□ 0.47
Col6a4A2AX52 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Col6a4A2AX52 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18■□□□□ 0.47
Col6a4A2AX52 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18■□□□□ 0.47
Col6a4A2AX52 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col6a4A2AX52 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a4A2AX52 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a4A2AX52 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Col6a4A2AX52 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Col6a4A2AX52 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.98■□□□□ 0.47
Col6a4A2AX52 H3f3aos-201ENSMUST00000097448 2905 ntBASIC17.98■□□□□ 0.47
Col6a4A2AX52 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a4A2AX52 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a4A2AX52 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Col6a4A2AX52 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a4A2AX52 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC17.97■□□□□ 0.47
Col6a4A2AX52 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a4A2AX52 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.97■□□□□ 0.47
Col6a4A2AX52 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a4A2AX52 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Col6a4A2AX52 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.96■□□□□ 0.47
Col6a4A2AX52 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a4A2AX52 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Col6a4A2AX52 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC17.95■□□□□ 0.46
Col6a4A2AX52 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a4A2AX52 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Gm28731-201ENSMUST00000185564 1569 ntBASIC17.93■□□□□ 0.46
Col6a4A2AX52 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col6a4A2AX52 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a4A2AX52 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a4A2AX52 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a4A2AX52 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.92■□□□□ 0.46
Col6a4A2AX52 Gm43137-201ENSMUST00000198052 594 ntBASIC17.92■□□□□ 0.46
Col6a4A2AX52 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.92■□□□□ 0.46
Col6a4A2AX52 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms