Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.87□□□□□ -0.19
Clp1Q99LI9 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.87□□□□□ -0.19
Clp1Q99LI9 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm14109-201ENSMUST00000118814 309 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm13875-201ENSMUST00000120162 282 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm14704-201ENSMUST00000120300 874 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm27046-201ENSMUST00000182160 463 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Gm5846-201ENSMUST00000193146 1414 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC13.86□□□□□ -0.19
Clp1Q99LI9 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Clp1Q99LI9 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.85□□□□□ -0.19
Clp1Q99LI9 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.85□□□□□ -0.19
Clp1Q99LI9 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.85□□□□□ -0.19
Clp1Q99LI9 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Daam2-202ENSMUST00000224595 1926 ntBASIC13.85□□□□□ -0.19
Clp1Q99LI9 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Clp1Q99LI9 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm14263-201ENSMUST00000117955 746 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm13492-201ENSMUST00000119772 665 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm26361-201ENSMUST00000158868 186 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm25732-201ENSMUST00000175168 60 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Clp1Q99LI9 Mir6927-201ENSMUST00000184494 71 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm3096-201ENSMUST00000185770 364 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Gm38092-201ENSMUST00000195600 653 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC13.84□□□□□ -0.19
Clp1Q99LI9 AC132260.2-201ENSMUST00000224482 344 ntBASIC13.84□□□□□ -0.19
Clp1Q99LI9 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms