Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm24543-201ENSMUST00000103867 82 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm9719-201ENSMUST00000162765 543 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Shd-206ENSMUST00000225145 998 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col28a1Q2UY11 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col28a1Q2UY11 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col28a1Q2UY11 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col28a1Q2UY11 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Col28a1Q2UY11 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col28a1Q2UY11 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Gm24694-201ENSMUST00000180054 110 ntBASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Gm27663-201ENSMUST00000184839 110 ntBASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col28a1Q2UY11 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms