Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Sdc1P18828 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Gm25927-201ENSMUST00000175058 117 ntBASIC10.78□□□□□ -0.68
Sdc1P18828 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC10.78□□□□□ -0.68
Sdc1P18828 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Gm5466-201ENSMUST00000119395 1890 ntBASIC10.78□□□□□ -0.68
Sdc1P18828 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Sdc1P18828 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC10.77□□□□□ -0.69
Sdc1P18828 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Gm13823-201ENSMUST00000119930 345 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC10.77□□□□□ -0.69
Sdc1P18828 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Ighv1-51-201ENSMUST00000192903 354 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Gm43365-201ENSMUST00000196522 2106 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Gm43073-201ENSMUST00000198200 1189 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Gm3695-201ENSMUST00000087222 1009 ntBASIC10.77□□□□□ -0.69
Sdc1P18828 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC10.77□□□□□ -0.69
Sdc1P18828 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sdc1P18828 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC10.76□□□□□ -0.69
Sdc1P18828 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm37437-201ENSMUST00000194451 1937 ntBASIC10.76□□□□□ -0.69
Sdc1P18828 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Sdc1P18828 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Sdc1P18828 Mir7036b-201ENSMUST00000184791 63 ntBASIC10.76□□□□□ -0.69
Sdc1P18828 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm44124-201ENSMUST00000204159 472 ntBASIC10.76□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms