Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm37472-201ENSMUST00000192342 4052 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm10327-201ENSMUST00000105222 1002 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm13223-201ENSMUST00000118609 747 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm5866-201ENSMUST00000177881 973 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm8116-201ENSMUST00000182917 1201 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Mir7684-201ENSMUST00000183858 60 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm17837-201ENSMUST00000186435 985 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm5069-202ENSMUST00000192714 1011 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm2451-201ENSMUST00000199447 999 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Gm10290-201ENSMUST00000200451 999 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC10.69□□□□□ -0.7
Cdx1P18111 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 AC125206.2-201ENSMUST00000217454 574 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gm5859-201ENSMUST00000165401 2324 ntBASIC10.69□□□□□ -0.7
Cdx1P18111 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx1P18111 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx1P18111 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdx1P18111 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Cdx1P18111 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 AC122860.2-201ENSMUST00000217967 2671 ntBASIC10.68□□□□□ -0.7
Cdx1P18111 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdx1P18111 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC10.68□□□□□ -0.7
Cdx1P18111 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Gm37277-201ENSMUST00000194052 1111 ntBASIC10.68□□□□□ -0.7
Cdx1P18111 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Wdyhv1-203ENSMUST00000226889 394 ntBASIC10.68□□□□□ -0.7
Cdx1P18111 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Cdx1P18111 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdx1P18111 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC10.68□□□□□ -0.7
Cdx1P18111 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Cdx1P18111 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 81.2 ms