Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 AA619741-201ENSMUST00000195095 646 ntBASIC12.59□□□□□ -0.39
Lire1P11260 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.59□□□□□ -0.39
Lire1P11260 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.59□□□□□ -0.39
Lire1P11260 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.59□□□□□ -0.39
Lire1P11260 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Lire1P11260 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Lire1P11260 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Lire1P11260 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Lire1P11260 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.58□□□□□ -0.4
Lire1P11260 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gm12091-201ENSMUST00000146791 830 ntBASIC12.58□□□□□ -0.4
Lire1P11260 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Lire1P11260 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gm21854-201ENSMUST00000179901 471 ntBASIC12.58□□□□□ -0.4
Lire1P11260 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gm37917-201ENSMUST00000194711 392 ntBASIC12.58□□□□□ -0.4
Lire1P11260 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Gm19220-201ENSMUST00000222682 803 ntBASIC12.58□□□□□ -0.4
Lire1P11260 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.58□□□□□ -0.4
Lire1P11260 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.58□□□□□ -0.4
Lire1P11260 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lire1P11260 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Lire1P11260 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.57□□□□□ -0.4
Lire1P11260 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Gm9522-201ENSMUST00000182394 926 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Gm18062-201ENSMUST00000208020 547 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Gm18055-201ENSMUST00000208254 547 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.57□□□□□ -0.4
Lire1P11260 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.57□□□□□ -0.4
Lire1P11260 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms