Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC15.26■□□□□ 0.03
Col1a1P11087 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col1a1P11087 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.26■□□□□ 0.03
Col1a1P11087 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Col1a1P11087 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Col1a1P11087 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Gm6963-201ENSMUST00000147879 379 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Gm3508-201ENSMUST00000186012 792 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Gm32999-201ENSMUST00000192693 562 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Gm37666-201ENSMUST00000194110 866 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Gm19187-201ENSMUST00000206781 892 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Gm45770-201ENSMUST00000212105 616 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 AC108416.1-202ENSMUST00000228927 1201 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col1a1P11087 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.25■□□□□ 0.03
Col1a1P11087 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col1a1P11087 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col1a1P11087 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Gm12015-201ENSMUST00000117065 843 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Gm6335-201ENSMUST00000118081 1194 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Gm7816-201ENSMUST00000119884 1194 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Gm15542-201ENSMUST00000121585 1194 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC15.24■□□□□ 0.03
Col1a1P11087 Dhrs4-202ENSMUST00000226168 828 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col1a1P11087 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col1a1P11087 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC15.24■□□□□ 0.03
Col1a1P11087 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.24■□□□□ 0.03
Col1a1P11087 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col1a1P11087 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC15.23■□□□□ 0.03
Col1a1P11087 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC15.23■□□□□ 0.03
Col1a1P11087 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC15.23■□□□□ 0.03
Col1a1P11087 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Gm9211-201ENSMUST00000182882 975 ntBASIC15.23■□□□□ 0.03
Col1a1P11087 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.23■□□□□ 0.03
Col1a1P11087 Gm44136-201ENSMUST00000203819 1106 ntBASIC15.23■□□□□ 0.03
Col1a1P11087 Gm17812-201ENSMUST00000204935 318 ntBASIC15.23■□□□□ 0.03
Col1a1P11087 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC15.23■□□□□ 0.03
Col1a1P11087 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Spcs1-203ENSMUST00000226374 592 ntBASIC15.23■□□□□ 0.03
Col1a1P11087 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms