Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vti1aO89116 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vti1aO89116 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vti1aO89116 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Vti1aO89116 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Vti1aO89116 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Vti1aO89116 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.23□□□□□ -0.13
Vti1aO89116 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC14.23□□□□□ -0.13
Vti1aO89116 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.23□□□□□ -0.13
Vti1aO89116 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Vti1aO89116 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Vti1aO89116 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vti1aO89116 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Vti1aO89116 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Vti1aO89116 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Gm4271-201ENSMUST00000174444 973 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Vti1aO89116 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Gm16372-201ENSMUST00000073088 450 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Gm10268-201ENSMUST00000085340 555 ntBASIC14.22□□□□□ -0.13
Vti1aO89116 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.22□□□□□ -0.13
Vti1aO89116 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Vti1aO89116 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vti1aO89116 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Vti1aO89116 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.21□□□□□ -0.13
Vti1aO89116 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.21□□□□□ -0.13
Vti1aO89116 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.21□□□□□ -0.13
Vti1aO89116 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Vti1aO89116 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vti1aO89116 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.21□□□□□ -0.13
Vti1aO89116 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.21□□□□□ -0.13
Vti1aO89116 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.21□□□□□ -0.13
Vti1aO89116 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.21□□□□□ -0.13
Vti1aO89116 AC140406.1-201ENSMUST00000226481 465 ntBASIC14.21□□□□□ -0.13
Vti1aO89116 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms