Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm43094-201ENSMUST00000196549 921 ntBASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm19078-201ENSMUST00000206311 727 ntBASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim3Q9R1R2 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Mir7654-201ENSMUST00000185082 70 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm9908-201ENSMUST00000211534 448 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm7653-201ENSMUST00000214567 508 ntBASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim3Q9R1R2 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trim3Q9R1R2 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Trim3Q9R1R2 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms