Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm13689-201ENSMUST00000119360 685 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm26464-201ENSMUST00000157094 305 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Mir1982-201ENSMUST00000157368 74 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm18041-201ENSMUST00000218210 618 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gm12500-202ENSMUST00000186471 2428 ntBASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdc40Q9DC48 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm15371-201ENSMUST00000117057 784 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm12390-201ENSMUST00000117897 397 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm2495-201ENSMUST00000191160 466 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm5276-201ENSMUST00000196683 1047 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm38671-201ENSMUST00000200573 130 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.29□□□□□ -0.44
Cdc40Q9DC48 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms