Protein–RNA interactions for Protein: Q99LU0

Chmp1b1, Charged multivesicular body protein 1b-1, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp1b1Q99LU0 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp1b1Q99LU0 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm7488-201ENSMUST00000117148 684 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm6218-201ENSMUST00000219812 628 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm2423-201ENSMUST00000074863 733 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gm13127-201ENSMUST00000118978 1389 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chmp1b1Q99LU0 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chmp1b1Q99LU0 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Gm12485-201ENSMUST00000119641 291 ntBASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chmp1b1Q99LU0 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chmp1b1Q99LU0 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms