Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm38341-201ENSMUST00000195357 515 ntBASIC11.42□□□□□ -0.58
Nkx3-1P97436 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm45865-201ENSMUST00000211815 945 ntBASIC11.42□□□□□ -0.58
Nkx3-1P97436 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm16479-201ENSMUST00000121706 932 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm4857-201ENSMUST00000192718 785 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm44985-201ENSMUST00000206202 1016 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm18244-201ENSMUST00000219747 1566 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.41□□□□□ -0.58
Nkx3-1P97436 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Nkx3-1P97436 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm37691-201ENSMUST00000192147 2573 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm42872-201ENSMUST00000200026 1967 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm15370-201ENSMUST00000117158 253 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms