Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Snora78-201ENSMUST00000158630 128 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gm8652-201ENSMUST00000181363 964 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Mir1247-201ENSMUST00000116706 82 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm14660-201ENSMUST00000119809 575 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm15429-201ENSMUST00000151268 798 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm27731-201ENSMUST00000185192 107 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm9728-201ENSMUST00000200197 1055 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm8463-201ENSMUST00000208573 613 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ushbp1Q8R370 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ushbp1Q8R370 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ushbp1Q8R370 Gm12928-201ENSMUST00000117115 573 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms