Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Upf3aQ3ULJ3 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Gm2383-201ENSMUST00000181461 807 ntBASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Upf3aQ3ULJ3 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Snord83b-201ENSMUST00000104546 94 ntBASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Gm14726-201ENSMUST00000120623 896 ntBASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Gm6015-201ENSMUST00000217493 1586 ntBASIC13.88□□□□□ -0.19
Upf3aQ3ULJ3 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gm37019-201ENSMUST00000192133 2134 ntBASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gm22121-201ENSMUST00000175148 54 ntBASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gm4819-201ENSMUST00000182170 1009 ntBASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Upf3aQ3ULJ3 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms