Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.95□□□□□ -0.34
Msh4Q99MT2 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.95□□□□□ -0.34
Msh4Q99MT2 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.95□□□□□ -0.34
Msh4Q99MT2 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msh4Q99MT2 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.94□□□□□ -0.34
Msh4Q99MT2 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm15678-201ENSMUST00000117573 960 ntBASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm15376-201ENSMUST00000122258 783 ntBASIC12.94□□□□□ -0.34
Msh4Q99MT2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Msh4Q99MT2 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm26464-201ENSMUST00000157094 305 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm27701-201ENSMUST00000184498 110 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.93□□□□□ -0.34
Msh4Q99MT2 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.93□□□□□ -0.34
Msh4Q99MT2 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Msh4Q99MT2 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 120.7 ms