Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gm11524-201ENSMUST00000119349 807 ntBASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gm26464-201ENSMUST00000157094 305 ntBASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Ushbp1Q8R370 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm15376-201ENSMUST00000122258 783 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm2495-201ENSMUST00000191160 466 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm38144-201ENSMUST00000192790 465 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.89□□□□□ -0.03
Ushbp1Q8R370 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Mir874-201ENSMUST00000104769 76 ntBASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Gm37424-201ENSMUST00000191727 561 ntBASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Olfr582-201ENSMUST00000098212 960 ntBASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ushbp1Q8R370 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ushbp1Q8R370 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms