Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Mir874-201ENSMUST00000104769 76 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gm27533-201ENSMUST00000183800 152 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gm27631-201ENSMUST00000184163 466 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gm44344-201ENSMUST00000200287 129 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gm9794-201ENSMUST00000202370 423 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Gm27680-201ENSMUST00000184192 160 ntBASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Gm27838-201ENSMUST00000184829 128 ntBASIC12.91□□□□□ -0.34
Col28a1Q2UY11 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col28a1Q2UY11 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms