Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm15547-201ENSMUST00000122152 333 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC13.68□□□□□ -0.22
Sox9Q04887 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sox9Q04887 Gm44405-201ENSMUST00000198952 126 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Gm5950-201ENSMUST00000213337 772 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sox9Q04887 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sox9Q04887 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.67□□□□□ -0.22
Sox9Q04887 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Gm25214-201ENSMUST00000104573 129 ntBASIC13.67□□□□□ -0.22
Sox9Q04887 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Gm12208-201ENSMUST00000122004 163 ntBASIC13.67□□□□□ -0.22
Sox9Q04887 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.67□□□□□ -0.22
Sox9Q04887 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Sox9Q04887 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Gm2546-201ENSMUST00000182630 991 ntBASIC13.67□□□□□ -0.22
Sox9Q04887 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.67□□□□□ -0.22
Sox9Q04887 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
Sox9Q04887 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.67□□□□□ -0.22
Sox9Q04887 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Sox9Q04887 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC13.67□□□□□ -0.22
Sox9Q04887 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.67□□□□□ -0.22
Sox9Q04887 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Sox9Q04887 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sox9Q04887 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Sorbs3-204ENSMUST00000227929 2460 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Snord83b-201ENSMUST00000104546 94 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm14109-201ENSMUST00000118814 309 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Gm6447-201ENSMUST00000118905 835 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.66□□□□□ -0.22
Sox9Q04887 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Gm18393-201ENSMUST00000208349 1131 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.66□□□□□ -0.22
Sox9Q04887 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Sox9Q04887 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sox9Q04887 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms