Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.04□□□□□ -0.48
Lmx1bO88609 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Gm24644-201ENSMUST00000157114 139 ntBASIC12.04□□□□□ -0.48
Lmx1bO88609 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Proscos-202ENSMUST00000178990 666 ntBASIC12.04□□□□□ -0.48
Lmx1bO88609 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.04□□□□□ -0.48
Lmx1bO88609 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Itm2b-204ENSMUST00000228637 783 ntBASIC12.04□□□□□ -0.48
Lmx1bO88609 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Lmx1bO88609 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lmx1bO88609 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Mir1938-201ENSMUST00000158746 100 ntBASIC12.03□□□□□ -0.48
Lmx1bO88609 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm40466-201ENSMUST00000212174 422 ntBASIC12.03□□□□□ -0.48
Lmx1bO88609 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.03□□□□□ -0.48
Lmx1bO88609 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gm12500-202ENSMUST00000186471 2428 ntBASIC12.03□□□□□ -0.48
Lmx1bO88609 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.03□□□□□ -0.48
Lmx1bO88609 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lmx1bO88609 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lmx1bO88609 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Lmx1bO88609 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms