Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Pck2-205ENSMUST00000226352 2784 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm7820-201ENSMUST00000121012 1052 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm14767-201ENSMUST00000121559 586 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm44344-201ENSMUST00000200287 129 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm5867-201ENSMUST00000063197 592 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm5320-201ENSMUST00000207163 1519 ntBASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm13223-201ENSMUST00000118609 747 ntBASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm13453-201ENSMUST00000118708 357 ntBASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gm17837-201ENSMUST00000186435 985 ntBASIC13.13□□□□□ -0.31
Lima1Q9ERG0 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 AC124751.1-201ENSMUST00000222716 1408 ntBASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Lima1Q9ERG0 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms