Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm6198-201ENSMUST00000191337 2929 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm7049-201ENSMUST00000223520 1712 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 n-R5s64-201ENSMUST00000102019 119 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm24891-201ENSMUST00000104391 136 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm25998-201ENSMUST00000175397 53 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Ighv1-48-201ENSMUST00000191795 294 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm9116-201ENSMUST00000192400 1018 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm5298-201ENSMUST00000201122 892 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 AC164087.2-201ENSMUST00000216206 1072 ntBASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm20414-201ENSMUST00000172918 646 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm43184-201ENSMUST00000197247 542 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm2965-201ENSMUST00000198365 343 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm18636-201ENSMUST00000218846 1066 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Gm9072-201ENSMUST00000218390 1514 ntBASIC17.62■□□□□ 0.41
Scn4aQ9ER60 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Scn4aQ9ER60 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm14724-201ENSMUST00000118400 537 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 CT030653.1-201ENSMUST00000224382 1279 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm25063-201ENSMUST00000104666 94 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm26989-201ENSMUST00000182608 749 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm3017-201ENSMUST00000203603 1126 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 AC166344.1-201ENSMUST00000223745 674 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 AC165260.2-203ENSMUST00000224237 336 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Gm26448-201ENSMUST00000082446 203 ntBASIC17.61■□□□□ 0.41
Scn4aQ9ER60 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm26013-201ENSMUST00000104404 119 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm22442-201ENSMUST00000157256 144 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm21092-201ENSMUST00000178995 955 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms