Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim11Q99PQ2 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Gm42612-201ENSMUST00000197986 623 ntBASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Gm43170-201ENSMUST00000199827 612 ntBASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC15.16■□□□□ 0.02
Trim11Q99PQ2 AC073947.2-201ENSMUST00000215888 1130 ntBASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim11Q99PQ2 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 AC137842.1-201ENSMUST00000227896 2064 ntBASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Gm29608-201ENSMUST00000190444 463 ntBASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Trim11Q99PQ2 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms