Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 AC133598.1-201ENSMUST00000224327 660 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm37795-201ENSMUST00000194216 2459 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm44891-201ENSMUST00000208817 2223 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm8793-201ENSMUST00000183069 1303 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm5850-201ENSMUST00000192923 1206 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Gm4768-201ENSMUST00000206199 686 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 CU024892.2-201ENSMUST00000224608 832 ntBASIC18.67■□□□□ 0.58
Usp47Q8BY87 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp47Q8BY87 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm7809-201ENSMUST00000153199 742 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm3890-201ENSMUST00000182416 207 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm9061-201ENSMUST00000182707 1006 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm37008-201ENSMUST00000195712 319 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm45331-201ENSMUST00000209868 554 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Gm8399-201ENSMUST00000082300 1117 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Usp47Q8BY87 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC18.66■□□□□ 0.58
Usp47Q8BY87 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp47Q8BY87 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Gm9025-201ENSMUST00000122415 1575 ntBASIC18.65■□□□□ 0.58
Usp47Q8BY87 AC113060.1-201ENSMUST00000225689 1573 ntBASIC18.65■□□□□ 0.58
Usp47Q8BY87 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms