Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm16202-201ENSMUST00000117532 544 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm8805-201ENSMUST00000117848 313 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm11793-201ENSMUST00000120433 981 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm13342-201ENSMUST00000121055 207 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm7584-201ENSMUST00000175829 940 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm44069-201ENSMUST00000204898 506 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC11.48□□□□□ -0.57
Nkx3-1P97436 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Nkx3-1P97436 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm2231-201ENSMUST00000125661 612 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm7783-201ENSMUST00000204795 781 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm9368-201ENSMUST00000219348 831 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.47□□□□□ -0.57
Nkx3-1P97436 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Nkx3-1P97436 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Nkx3-1P97436 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC11.46□□□□□ -0.57
Nkx3-1P97436 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Nkx3-1P97436 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Nkx3-1P97436 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms