Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Sdc1P18828 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 AC114543.1-201ENSMUST00000226451 1558 ntBASIC10.86□□□□□ -0.67
Sdc1P18828 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Sdc1P18828 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC10.86□□□□□ -0.67
Sdc1P18828 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Sdc1P18828 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC10.86□□□□□ -0.67
Sdc1P18828 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm6550-201ENSMUST00000187574 993 ntBASIC10.86□□□□□ -0.67
Sdc1P18828 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm36970-201ENSMUST00000193688 1859 ntBASIC10.86□□□□□ -0.67
Sdc1P18828 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm44758-201ENSMUST00000206096 2068 ntBASIC10.86□□□□□ -0.67
Sdc1P18828 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 AC157950.1-201ENSMUST00000217561 2168 ntBASIC10.86□□□□□ -0.67
Sdc1P18828 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Sdc1P18828 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
Sdc1P18828 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Sdc1P18828 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Zkscan3-207ENSMUST00000223831 2101 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Sdc1P18828 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Mir698-201ENSMUST00000102164 109 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC10.85□□□□□ -0.67
Sdc1P18828 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Gm10231-201ENSMUST00000181584 441 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Mir7221-201ENSMUST00000184009 72 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Gm27704-201ENSMUST00000185094 107 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC10.85□□□□□ -0.67
Sdc1P18828 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Gm10175-202ENSMUST00000208752 441 ntBASIC10.85□□□□□ -0.67
Sdc1P18828 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Sdc1P18828 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Sdc1P18828 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms