Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm15460-201ENSMUST00000118147 391 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm27680-201ENSMUST00000184192 160 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm46209-201ENSMUST00000217912 553 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 AC139382.1-201ENSMUST00000221402 498 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gm9229-201ENSMUST00000222777 126 ntBASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lima1Q9ERG0 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.15□□□□□ -0.3
Lima1Q9ERG0 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm27321-201ENSMUST00000185021 205 ntBASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Gm6888-201ENSMUST00000221983 706 ntBASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 AC151895.1-201ENSMUST00000219025 1742 ntBASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lima1Q9ERG0 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Lima1Q9ERG0 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Lima1Q9ERG0 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Lima1Q9ERG0 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Lima1Q9ERG0 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lima1Q9ERG0 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms