Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Gm12928-201ENSMUST00000117115 573 ntBASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Upf3bQ3ULL6 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Mir692-1-201ENSMUST00000102263 109 ntBASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Upf3bQ3ULL6 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3bQ3ULL6 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms