Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Gm15808-201ENSMUST00000119046 604 ntBASIC12.79□□□□□ -0.36
Sox3P53784 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.79□□□□□ -0.36
Sox3P53784 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.79□□□□□ -0.36
Sox3P53784 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.79□□□□□ -0.36
Sox3P53784 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.79□□□□□ -0.36
Sox3P53784 Gm21470-201ENSMUST00000187680 696 ntBASIC12.79□□□□□ -0.36
Sox3P53784 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Gm38266-201ENSMUST00000194931 421 ntBASIC12.79□□□□□ -0.36
Sox3P53784 Gm43818-201ENSMUST00000200605 466 ntBASIC12.79□□□□□ -0.36
Sox3P53784 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.79□□□□□ -0.36
Sox3P53784 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.79□□□□□ -0.36
Sox3P53784 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.79□□□□□ -0.36
Sox3P53784 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Sox3P53784 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sox3P53784 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox3P53784 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Sox3P53784 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.78□□□□□ -0.36
Sox3P53784 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 Gm5425-201ENSMUST00000214125 459 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Gm45930-201ENSMUST00000221330 292 ntBASIC12.78□□□□□ -0.36
Sox3P53784 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Gm9823-201ENSMUST00000051212 327 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.78□□□□□ -0.36
Sox3P53784 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sox3P53784 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox3P53784 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.77□□□□□ -0.36
Sox3P53784 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Sox3P53784 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
Sox3P53784 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.77□□□□□ -0.36
Sox3P53784 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox3P53784 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox3P53784 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sox3P53784 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sox3P53784 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.77□□□□□ -0.37
Sox3P53784 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC12.77□□□□□ -0.37
Sox3P53784 Gm24644-201ENSMUST00000157114 139 ntBASIC12.77□□□□□ -0.37
Sox3P53784 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sox3P53784 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms