Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdx1P18111 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm15693-201ENSMUST00000120470 637 ntBASIC10.79□□□□□ -0.68
Cdx1P18111 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
Cdx1P18111 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdx1P18111 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdx1P18111 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC10.79□□□□□ -0.68
Cdx1P18111 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Cdx1P18111 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm2810-201ENSMUST00000118681 990 ntBASIC10.78□□□□□ -0.68
Cdx1P18111 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdx1P18111 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
Cdx1P18111 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdx1P18111 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC10.78□□□□□ -0.68
Cdx1P18111 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdx1P18111 Arhgef33-209ENSMUST00000225223 714 ntBASIC10.78□□□□□ -0.68
Cdx1P18111 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC10.78□□□□□ -0.68
Cdx1P18111 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm10176-201ENSMUST00000159707 2264 ntBASIC10.78□□□□□ -0.68
Cdx1P18111 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Cdx1P18111 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
Cdx1P18111 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx1P18111 Gm5385-201ENSMUST00000118988 1559 ntBASIC10.77□□□□□ -0.68
Cdx1P18111 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx1P18111 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx1P18111 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx1P18111 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC10.77□□□□□ -0.68
Cdx1P18111 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx1P18111 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx1P18111 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx1P18111 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx1P18111 AC154404.1-201ENSMUST00000223601 2077 ntBASIC10.77□□□□□ -0.69
Cdx1P18111 AC155298.2-201ENSMUST00000225485 6226 ntBASIC10.77□□□□□ -0.69
Cdx1P18111 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx1P18111 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
Cdx1P18111 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx1P18111 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms