Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC10.68□□□□□ -0.7
Chd6A3KFM7 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Gm6855-201ENSMUST00000206307 790 ntBASIC10.68□□□□□ -0.7
Chd6A3KFM7 Gm9132-201ENSMUST00000210182 832 ntBASIC10.68□□□□□ -0.7
Chd6A3KFM7 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Mirlet7i-201ENSMUST00000083472 85 ntBASIC10.68□□□□□ -0.7
Chd6A3KFM7 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Gm10676-201ENSMUST00000098778 3221 ntBASIC10.68□□□□□ -0.7
Chd6A3KFM7 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Chd6A3KFM7 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm5257-201ENSMUST00000121823 790 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 AC122305.4-201ENSMUST00000216159 1206 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm15573-201ENSMUST00000119487 540 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 H2-Q3-201ENSMUST00000172583 608 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Gm43399-201ENSMUST00000202546 2374 ntBASIC10.67□□□□□ -0.7
Chd6A3KFM7 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Chd6A3KFM7 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm14058-201ENSMUST00000116082 735 ntBASIC10.66□□□□□ -0.7
Chd6A3KFM7 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm9645-201ENSMUST00000197131 792 ntBASIC10.66□□□□□ -0.7
Chd6A3KFM7 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm45310-201ENSMUST00000210436 275 ntBASIC10.66□□□□□ -0.7
Chd6A3KFM7 Gm4797-201ENSMUST00000219075 1283 ntBASIC10.66□□□□□ -0.7
Chd6A3KFM7 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Chd6A3KFM7 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms