Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Ddx56Q9D0R4 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Mir6392-201ENSMUST00000184924 108 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Mir7654-201ENSMUST00000185082 70 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.04□□□□□ -0.16
Ddx56Q9D0R4 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gm15371-201ENSMUST00000117057 784 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Mir7221-201ENSMUST00000184009 72 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Gm37648-201ENSMUST00000192072 2563 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx56Q9D0R4 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms