Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Mir1897-201ENSMUST00000122581 272 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ddx28Q9CWT6 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Gm25927-201ENSMUST00000175058 117 ntBASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Gm43134-201ENSMUST00000199434 1886 ntBASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx28Q9CWT6 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx28Q9CWT6 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms