Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Usp11Q99K46 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.09□□□□□ -0.15
Usp11Q99K46 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usp11Q99K46 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.08□□□□□ -0.15
Usp11Q99K46 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Usp11Q99K46 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Usp11Q99K46 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Usp11Q99K46 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.15
Usp11Q99K46 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Usp11Q99K46 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Usp11Q99K46 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Usp11Q99K46 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Gm6912-201ENSMUST00000117218 544 ntBASIC14.08□□□□□ -0.16
Usp11Q99K46 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Syt7-205ENSMUST00000224135 1557 ntBASIC14.08□□□□□ -0.16
Usp11Q99K46 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp11Q99K46 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Usp11Q99K46 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm13385-201ENSMUST00000121089 220 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm8927-201ENSMUST00000181978 981 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp11Q99K46 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm6218-201ENSMUST00000219812 628 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm3222-201ENSMUST00000071282 990 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.07□□□□□ -0.16
Usp11Q99K46 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp11Q99K46 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp11Q99K46 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Usp11Q99K46 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 Gm42690-201ENSMUST00000197921 1836 ntBASIC14.06□□□□□ -0.16
Usp11Q99K46 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp11Q99K46 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms