Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Mir1894-201ENSMUST00000122802 81 ntBASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Gm17794-201ENSMUST00000220252 955 ntBASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ushbp1Q8R370 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Gm43094-201ENSMUST00000196549 921 ntBASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.96□□□□□ -0.01
Ushbp1Q8R370 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Gm5161-201ENSMUST00000075243 853 ntBASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ushbp1Q8R370 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ushbp1Q8R370 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms