Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm12957-201ENSMUST00000117835 377 ntBASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm27839-201ENSMUST00000184242 106 ntBASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Vps53Q8CCB4 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Vps53Q8CCB4 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Gm11557-201ENSMUST00000120200 1008 ntBASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Gm8927-201ENSMUST00000181978 981 ntBASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Gm3222-201ENSMUST00000071282 990 ntBASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC15.52■□□□□ 0.08
Vps53Q8CCB4 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Vps53Q8CCB4 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms