Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Limch1Q3UH68 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Gm7446-201ENSMUST00000221035 1240 ntBASIC15.72■□□□□ 0.11
Limch1Q3UH68 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Gm5356-201ENSMUST00000093326 615 ntBASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.72■□□□□ 0.11
Limch1Q3UH68 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Limch1Q3UH68 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Gm43134-201ENSMUST00000199434 1886 ntBASIC15.71■□□□□ 0.11
Limch1Q3UH68 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Limch1Q3UH68 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Limch1Q3UH68 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Limch1Q3UH68 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Limch1Q3UH68 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Limch1Q3UH68 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC15.71■□□□□ 0.1
Limch1Q3UH68 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.7■□□□□ 0.1
Limch1Q3UH68 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Limch1Q3UH68 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.7■□□□□ 0.1
Limch1Q3UH68 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Mir692-1-201ENSMUST00000102263 109 ntBASIC15.7■□□□□ 0.1
Limch1Q3UH68 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC15.7■□□□□ 0.1
Limch1Q3UH68 AC155258.1-201ENSMUST00000219303 253 ntBASIC15.7■□□□□ 0.1
Limch1Q3UH68 Gm17330-201ENSMUST00000221047 165 ntBASIC15.7■□□□□ 0.1
Limch1Q3UH68 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Limch1Q3UH68 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 105.6 ms