Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm45930-201ENSMUST00000221330 292 ntBASIC11.53□□□□□ -0.56
Nkx3-1P97436 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Abhd6-203ENSMUST00000225234 1958 ntBASIC11.53□□□□□ -0.56
Nkx3-1P97436 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Nkx3-1P97436 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Nkx3-1P97436 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Nkx3-1P97436 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Nkx3-1P97436 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm43118-201ENSMUST00000199149 775 ntBASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm3961-201ENSMUST00000204425 994 ntBASIC11.52□□□□□ -0.57
Nkx3-1P97436 CT009713.10-202ENSMUST00000225734 696 ntBASIC11.52□□□□□ -0.57
Nkx3-1P97436 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Nkx3-1P97436 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm7029-201ENSMUST00000173226 450 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm25927-201ENSMUST00000175058 117 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Gm42769-201ENSMUST00000198576 1659 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 AC159649.2-201ENSMUST00000222984 3223 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms