Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ccdc28bQ8CEG5 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Gm1401-201ENSMUST00000122048 772 ntBASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Rprl2-201ENSMUST00000157150 290 ntBASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ccdc28bQ8CEG5 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm5566-201ENSMUST00000116118 459 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm15678-201ENSMUST00000117573 960 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Bloc1s5-203ENSMUST00000224902 612 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 AC154806.6-201ENSMUST00000228192 202 ntBASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ccdc28bQ8CEG5 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ccdc28bQ8CEG5 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 CT025624.1-201ENSMUST00000224007 2700 ntBASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ccdc28bQ8CEG5 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms