Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm6447-201ENSMUST00000118905 835 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm11425-201ENSMUST00000119608 498 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm10156-201ENSMUST00000122364 462 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm9396-201ENSMUST00000076703 567 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim47Q8C0E3 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm22331-201ENSMUST00000158066 136 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Mir7085-201ENSMUST00000184353 66 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm29649-201ENSMUST00000185649 419 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Trim47Q8C0E3 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gm14350-201ENSMUST00000116642 640 ntBASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim47Q8C0E3 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.83□□□□□ -0.03
Trim47Q8C0E3 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Trim47Q8C0E3 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Trim47Q8C0E3 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim47Q8C0E3 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.83□□□□□ -0.04
Trim47Q8C0E3 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim47Q8C0E3 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Trim47Q8C0E3 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.83□□□□□ -0.04
Trim47Q8C0E3 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms