Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.79■□□□□ 0.12
Trim56Q80VI1 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm5989-201ENSMUST00000096092 2077 ntBASIC15.79■□□□□ 0.12
Trim56Q80VI1 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm6266-201ENSMUST00000203844 806 ntBASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim56Q80VI1 Gm15544-201ENSMUST00000118776 1531 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gm13829-201ENSMUST00000119600 138 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gm27847-201ENSMUST00000183711 107 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gm27375-201ENSMUST00000183799 107 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gm45841-201ENSMUST00000207700 164 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 CT573086.1-201ENSMUST00000227202 1074 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trim56Q80VI1 Zscan30-202ENSMUST00000224144 1458 ntBASIC15.78■□□□□ 0.12
Trim56Q80VI1 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gm15222-202ENSMUST00000228667 1726 ntBASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gm8213-201ENSMUST00000118191 441 ntBASIC15.77■□□□□ 0.12
Trim56Q80VI1 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
Trim56Q80VI1 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.12
Trim56Q80VI1 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms