Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ddx55Q6ZPL9 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm12134-201ENSMUST00000122109 520 ntBASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm38317-201ENSMUST00000195564 343 ntBASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ddx55Q6ZPL9 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 AC167669.2-201ENSMUST00000224417 1620 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm23270-201ENSMUST00000104055 131 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm25214-201ENSMUST00000104573 129 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm11531-201ENSMUST00000117614 555 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm11439-201ENSMUST00000118598 409 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm4909-201ENSMUST00000118749 794 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Mir5120-201ENSMUST00000175020 78 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Gm27341-201ENSMUST00000183570 106 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Mir6979-201ENSMUST00000183927 56 ntBASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ddx55Q6ZPL9 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.02
Ddx55Q6ZPL9 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC15.14■□□□□ 0.01
Ddx55Q6ZPL9 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms