Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm6015-201ENSMUST00000217493 1586 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 AC159196.2-201ENSMUST00000224082 1622 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm12537-201ENSMUST00000119266 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm12070-201ENSMUST00000119551 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm4986-201ENSMUST00000119731 549 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm12671-201ENSMUST00000119978 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm13292-201ENSMUST00000120014 1000 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC11.43□□□□□ -0.58
Col8a1Q00780 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm10359-201ENSMUST00000180167 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm12033-201ENSMUST00000180654 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm5559-201ENSMUST00000180755 1002 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Mir7032-201ENSMUST00000185154 79 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm37986-201ENSMUST00000193285 383 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm37497-201ENSMUST00000195830 798 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm42997-202ENSMUST00000200321 985 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.43□□□□□ -0.58
Col8a1Q00780 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Col8a1Q00780 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col8a1Q00780 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm43399-201ENSMUST00000202546 2374 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Mir5120-201ENSMUST00000175020 78 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.42□□□□□ -0.58
Col8a1Q00780 AC073947.2-201ENSMUST00000215888 1130 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 AC122371.3-201ENSMUST00000223402 1061 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms